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How to get root back after OTA update

When I updated to Android 4.1.2 on my Galaxy Nexus, I lost root. Everything is still there, but the permissions on system/bin/su no longer include the setuid bit, which prevents su from working. I ...
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Is the process for rooting an S3 after an OTA update the same?

When following instructions for rooting a specific S3 model (ATT SGH-I747), does it make a difference whether any OTA updates were applied? Also, is there any real likelihood of a future OTA update ...