i lost access and i need to restore factory to possibly return to clear the issue

I recently moved a rooted system on both Beanstalk custom and SlimSaber (both KitKat 4.4.2) to Omni ROM 4.4.3, but when I wiped and flashed I lost my recovery access (TWRP) and lost root. Then I somehow got in a bind and disabled my settings and developer options menus, and I can't re-root using USB because the connector is bad.

I think if factory reset I can at least get my menus accessible. Is there a terminal command to factory reset or a good .apk that will re-root my device? I tried framaroot and towelroot.

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